R/kegg.R
Downloads basic KEGG pathway maps
tor_fetch_kegg_pathway_maps(pathways, download_folder = "kegg", overwrite = FALSE, kgml = TRUE, species_png = TRUE, general_png = TRUE, quiet = TRUE, ...)
pathways | data frame with columns kegg_org_id and kegg_pathway_id |
---|---|
download_folder | which folder to download to (relative to working directory or absolute), will be created if it does not exist |
overwrite | whether to overwrite existing files |
quiet | parameter passed to download.file |
... | additional parameters passed on to download.file |
returns the unaltered pathways data frame